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1

Long livestock farming history and human landscape shaping revealed by lake sediment DNA

Giguet-Covex, Charline, Pansu, Johan, Arnaud, Fabien, Rey, Pierre-Jérôme, Griggo, Christophe, Gielly, Ludovic, Domaizon, Isabelle, Coissac, Eric, David, Fernand, Choler, Philippe, Poulenard, Jérôme, T

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 863 KB

english, 2014

2

Acceleration of cyanobacterial dominance in north temperate-subarctic lakes during the Anthropocene

Taranu, Zofia E., Gregory-Eaves, Irene, Leavitt, Peter R., Bunting, Lynda, Buchaca, Teresa, Catalan, Jordi, Domaizon, Isabelle, Guilizzoni, Piero, Lami, Andrea, McGowan, Suzanne, Moorhouse, Heather, M

Journal:

Ecology Letters

Year:

2015

Language:

english

File:

PDF, 1.26 MB

english, 2015

3

Taxon-specific and seasonal variations in flagellates grazing on heterotrophic bacteria in the oligotrophic Lake Annecy – importance of mixotrophy

Isabelle Domaizon, Sylvie Viboud, Dominique Fontvieille

Journal:

FEMS Microbiology Ecology

Year:

2003

Language:

english

File:

PDF, 677 KB

english, 2003

4

Effect of grazers and viruses on bacterial community structure and production in two contrasting trophic lakes

Lyria Berdjeb, Thomas Pollet, Isabelle Domaizon, Stéphan Jacquet

Journal:

BMC Microbiology

Year:

2011

Language:

english

File:

PDF, 1.76 MB

english, 2011

5

A 2-Year Assessment of the Main Environmental Factors Driving the Free-Living Bacterial Community Structure in Lake Bourget (France)

Lyria Berdjeb, Jean François Ghiglione, Isabelle Domaizon, Stéphan Jacquet

Journal:

Microbial Ecology

Year:

2011

Language:

english

File:

PDF, 681 KB

english, 2011

6

Seasonal and spatial variability of virio-, bacterio-, and picophytoplanktonic abundances in three peri-alpine lakes

Sébastien Personnic, Isabelle Domaizon, Ursula Dorigo, Lyria Berdjeb, Stéphan Jacquet

Journal:

Year:

2009

Language:

english

File:

PDF, 1.12 MB

english, 2009

7

Perkinsozoa, a well-known marine protozoan flagellate parasite group, newly identified in lacustrine systems: a review

Jean-François Mangot, Didier Debroas, Isabelle Domaizon

Journal:

Year:

2011

Language:

english

File:

PDF, 467 KB

english, 2011

8

Estimates of protozoan- and viral-mediated mortality of bacterioplankton in Lake Bourget (France)

STÉPHAN JACQUET, ISABELLE DOMAIZON, SÉBASTIEN PERSONNIC, ANGIA SRIRAM PRADEEP RAM, MIKAL HEDAL, SOLANGE DUHAMEL, TÉLESPHORE SIME-NGANDO

Journal:

Freshwater Biology

Year:

2005

Language:

english

File:

PDF, 350 KB

english, 2005

9

Community composition of lacustrine small eukaryotes in hyper-eutrophic conditions in relation to top-down and bottom-up factors

Cécile Lepère, Isabelle Domaizon, Didier Debroas

Journal:

FEMS Microbiology Ecology

Year:

2007

Language:

english

File:

PDF, 270 KB

english, 2007

10

Ecological traits of planktonic viruses and prokaryotes along a full-salinity gradient

Yvan Bettarel, Thierry Bouvier, Corinne Bouvier, Claire Carré, Anne Desnues, Isabelle Domaizon, Stéphan Jacquet, Agnès Robin, Télesphore Sime-Ngando

Journal:

FEMS Microbiology Ecology

Year:

2011

Language:

english

File:

PDF, 502 KB

english, 2011

11

Diversity and dynamics of free-living and particle-associated Betaproteobacteria and Actinobacteria in relation to phytoplankton and zooplankton communities

Bushra Parveen, Jean-Philippe Reveilliez, Isabelle Mary, Viviane Ravet, Gisèle Bronner, Jean-François Mangot, Isabelle Domaizon, Didier Debroas

Journal:

FEMS Microbiology Ecology

Year:

2011

Language:

english

File:

PDF, 2.11 MB

english, 2011

12

Vertical structure of small eukaryotes in three lakes that differ by their trophic status: a quantitative approach

Lepère, Cecile, Masquelier, Sylvie, Mangot, Jean-François, Debroas, Didier, Domaizon, Isabelle

Journal:

The ISME Journal

Year:

2010

Language:

english

File:

PDF, 628 KB

english, 2010

13

Experimental study of the impacts of silver carp on plankton communities of eutrophic Villerest reservoir (France)

Isabelle Domaizon, Jean Devaux

Journal:

Aquatic Ecology

Year:

1999

Language:

english

File:

PDF, 126 KB

english, 1999

14

Nouvelle approche des biomanipulations des réseaux trophiques aquatiques. Introduction d'un poisson phytoplanctonophage, la carpe argentée (Hypophthalmichthys molitrix)

Isabelle Domaizon, Jean Devaux

Journal:

L'Année Biologique

Year:

1999

File:

PDF, 1.13 MB

1999

15

Spatial match between Planktothrix rubescens and whitefish in a mesotrophic peri-alpine lake: Evidence of toxins accumulation

Benoît Sotton, Orlane Anneville, Sabrina Cadel-Six, Isabelle Domaizon, Sophie Krys, Jean Guillard

Journal:

Year:

2011

Language:

english

File:

PDF, 1.47 MB

english, 2011

16

Impact of moderate silver carp biomass gradient on zooplankton communities in a eutrophic reservoir. Consequences for the use of silver carp in biomanipulation

Isabelle Domaizon, Jean Dévaux

Journal:

Comptes Rendus de l'Académie des Sciences - Series III - Sciences de la Vie

Year:

1999

Language:

french

File:

PDF, 271 KB

french, 1999

17

Are cyanobacterial blooms trophic dead ends?

Perga, Marie-Elodie, Domaizon, Isabelle, Guillard, Jean, Hamelet, Valérie, Anneville, Orlane

Journal:

Year:

2013

Language:

english

File:

PDF, 562 KB

english, 2013

18

Short-term responses of unicellular planktonic eukaryotes to increases in temperature and UVB radiation

Isabelle Domaizon, Cécile Lepère, Didier Debroas, Marc Bouvy, Jean Francois Ghiglione, Stephan Jacquet, Yvan Bettarel, Corinne Bouvier, Jean Pascal Torréton, Francesca Vidussi, Behzad Mostajir, Amy Ki

Journal:

BMC Microbiology

Year:

2012

Language:

english

File:

PDF, 442 KB

english, 2012

19

Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems

Lepère, Cécile, Domaizon, Isabelle, Taïb, Najwa, Mangot, Jean-François, Bronner, Gisèle, Boucher, Delphine, Debroas, Didier

Journal:

FEMS Microbiology Ecology

Year:

2013

Language:

english

File:

PDF, 464 KB

english, 2013

20

Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes

Mangot, Jean-François, Domaizon, Isabelle, Taib, Najwa, Marouni, Nemr, Duffaud, Emilie, Bronner, Gisèle, Debroas, Didier

Journal:

Environmental Microbiology

Year:

2013

Language:

english

File:

PDF, 965 KB

english, 2013

21

Dynamics of ammonia-oxidizing Archaea and Bacteria in contrasted freshwater ecosystems

Hugoni, Mylène, Etien, Sandrine, Bourges, Antoine, Lepère, Cécile, Domaizon, Isabelle, Mallet, Clarisse, Bronner, Gisèle, Debroas, Didier, Mary, Isabelle

Journal:

Research in Microbiology

Year:

2013

Language:

english

File:

PDF, 871 KB

english, 2013

22

Trophic transfer of microcystins through the lake pelagic food web: Evidence for the role of zooplankton as a vector in fish contamination

Sotton, Benoît, Guillard, Jean, Anneville, Orlane, Maréchal, Marjorie, Savichtcheva, Olga, Domaizon, Isabelle

Journal:

Science of The Total Environment

Year:

2014

Language:

english

File:

PDF, 1.42 MB

english, 2014

23

When is Sampling Complete? The Effects of Geographical Range and Marker Choice on Perceived Diversity in Nitzschia palea (Bacillariophyta)

Rimet, Frédéric, Trobajo, Rosa, Mann, David.G., Kermarrec, Lenaïg, Franc, Alain, Domaizon, Isabelle, Bouchez, Agnès

Journal:

Year:

2014

Language:

english

File:

PDF, 496 KB

english, 2014

24

The need for ecological monitoring of freshwaters in a changing world: a case study of Lakes Annecy, Bourget, and Geneva

Jacquet, Stéphan, Domaizon, Isabelle, Anneville, Orlane

Journal:

Environmental Monitoring and Assessment

Year:

2014

Language:

english

File:

PDF, 833 KB

english, 2014

25

Nodularin and cylindrospermopsin: a review of their effects on fish

Sotton, Benoît, Domaizon, Isabelle, Anneville, Orlane, Cattanéo, Franck, Guillard, Jean

Journal:

Reviews in Fish Biology and Fisheries

Year:

2015

Language:

english

File:

PDF, 456 KB

english, 2015

26

Effects of nutrients and warming on Planktothrix dynamics and diversity: a palaeolimnological view based on sedimentary DNA and RNA

Savichtcheva, Olga, Debroas, Didier, Perga, Marie Elodie, Arnaud, Fabien, Villar, Clément, Lyautey, Emilie, Kirkham, Amy, Chardon, Cécile, Alric, Benjamin, Domaizon, Isabelle

Journal:

Freshwater Biology

Year:

2015

Language:

english

File:

PDF, 945 KB

english, 2015

27

Blue-Green Algae in a “Greenhouse Century”? New Insights from Field Data on Climate Change Impacts on Cyanobacteria Abundance

Anneville, Orlane, Domaizon, Isabelle, Kerimoglu, Onur, Rimet, Frédéric, Jacquet, Stéphan

Journal:

Year:

2015

Language:

english

File:

PDF, 1.14 MB

english, 2015

28

Temporal dynamics of active A rchaea in oxygen-depleted zones of two deep lakes

Hugoni, Mylène, Domaizon, Isabelle, Taib, Najwa, Biderre-Petit, Corinne, Agogué, Hélène, Galand, Pierre E., Debroas, Didier, Mary, Isabelle

Journal:

Environmental Microbiology Reports

Year:

2015

Language:

english

File:

PDF, 595 KB

english, 2015

29

Analysis of DNA archived in lake sediments

Gregory-Eaves, Irene, Domaizon, Isabelle

Year:

2014

Language:

english

File:

PDF, 15.70 MB

english, 2014

30

Multi-scale phylogenetic heterogeneity of archaea, bacteria, methanogens and methanotrophs in lake sediments

Billard, Elodie, Domaizon, Isabelle, Tissot, Nathalie, Arnaud, Fabien, Lyautey, Emilie

Journal:

Year:

2015

Language:

english

File:

PDF, 582 KB

english, 2015

31

Evidence for an active rare biosphere within freshwater protists community

Debroas, Didier, Hugoni, Mylène, Domaizon, Isabelle

Journal:

Molecular Ecology

Year:

2015

Language:

english

File:

PDF, 936 KB

english, 2015

32

Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea

Hugoni, Mylène, Agogué, Hélène, Taib, Najwa, Domaizon, Isabelle, Moné, Anne, Galand, Pierre E., Bronner, Gisèle, Debroas, Didier, Mary, Isabelle

Journal:

Microbial Ecology

Year:

2015

Language:

english

File:

PDF, 1.81 MB

english, 2015

33

Is Planktonic Diversity Well Recorded in Sedimentary DNA? Toward the Reconstruction of Past Protistan Diversity

Capo, Eric, Debroas, Didier, Arnaud, Fabien, Domaizon, Isabelle

Journal:

Microbial Ecology

Year:

2015

Language:

english

File:

PDF, 1.05 MB

english, 2015

34

Trophic relationships between metazooplankton communities and their plankton food sources in the Iles Eparses (Western Indian Ocean)

Dupuy, Christine, Pagano, Marc, Got, Patrice, Domaizon, Isabelle, Chappuis, Alexis, Marchessaux, Guillaume, Bouvy, Marc

Journal:

Marine Environmental Research

Year:

2016

Language:

english

File:

PDF, 1.33 MB

english, 2016

35

Do small grazers influence virus-induced mortality of bacteria in Lake Bourget (France)?

Jacquet, Stéphan, Domaizon, Isabelle, Personnic, Sébastien, Sime-Ngando, Télesphore

Journal:

Fundamental and Applied Limnology / Archiv für Hydrobiologie

Year:

2007

Language:

english

File:

PDF, 111 KB

english, 2007

36

A 2-Year Assessment of the Main Environmental Factors Driving the Free-Living Bacterial Community Structure in Lake Bourget (France)

Lyria Berdjeb, Jean François Ghiglione, Isabelle Domaizon and Stéphan Jacquet

Journal:

Microbial Ecology

Year:

2011

Language:

english

File:

PDF, 2.68 MB

english, 2011

37

Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter?

Vasselon, Valentin, Domaizon, Isabelle, Rimet, Frédéric, Kahlert, Maria, Bouchez, Agnès

Journal:

Freshwater Science

Year:

2017

Language:

english

File:

PDF, 2.59 MB

english, 2017

38

DNA-based methods in paleolimnology: new opportunities for investigating long-term dynamics of lacustrine biodiversity

Domaizon, Isabelle, Winegardner, Amanda, Capo, Eric, Gauthier, Joanna, Gregory-Eaves, Irene

Journal:

Journal of Paleolimnology

Year:

2017

Language:

english

File:

PDF, 1.43 MB

english, 2017

39

Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming

Capo, Eric, Debroas, Didier, Arnaud, Fabien, Perga, Marie-Elodie, Chardon, Cécile, Domaizon, Isabelle

Journal:

Environmental Microbiology

Year:

2017

Language:

english

File:

PDF, 2.16 MB

english, 2017

40

Patterns and drivers of deep chlorophyll maxima structure in 100 lakes: The relative importance of light and thermal stratification

Leach, Taylor H., Beisner, Beatrix E., Carey, Cayelan C., Pernica, Patricia, Rose, Kevin C., Huot, Yannick, Brentrup, Jennifer A., Domaizon, Isabelle, Grossart, Hans-Peter, Ibelings, Bastiaan W., Jacq

Journal:

Limnology and Oceanography

Year:

2017

Language:

english

File:

PDF, 2.18 MB

english, 2017

41

To what extent is the DNA of microbial eukaryotes modified during burying into lake sediments? A repeat-coring approach on annually laminated sediments

Capo, Eric, Domaizon, Isabelle, Maier, Dominique, Debroas, Didier, Bigler, Christian

Journal:

Journal of Paleolimnology

Year:

2017

Language:

english

File:

PDF, 1.48 MB

english, 2017

42

Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication

Monchamp, Marie-Eve, Spaak, Piet, Domaizon, Isabelle, Dubois, Nathalie, Bouffard, Damien, Pomati, Francesco

Journal:

Nature Ecology & Evolution

Year:

2017

Language:

english

File:

PDF, 1.91 MB

english, 2017

43

Avoiding quantification bias in metabarcoding: application of a cell biovolume correction factor in diatom molecular biomonitoring

Vasselon, Valentin, Bouchez, Agnès, Rimet, Frédéric, Jacquet, Stéphan, Trobajo, Rosa, Corniquel, Méline, Tapolczai, Kálmán, Domaizon, Isabelle

Journal:

Methods in Ecology and Evolution

Year:

2017

Language:

english

File:

PDF, 1018 KB

english, 2017

44

Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data

Debroas, Didier, Domaizon, Isabelle, Humbert, Jean-Francois, Jardillier, Ludwig, Lepère, Cécile, Oudart, Anne, Taïb, Najwa

Journal:

FEMS Microbiology Ecology

Year:

2017

Language:

english

File:

PDF, 2.03 MB

english, 2017

45

Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program

Lefrançois, Estelle, Apothéloz-Perret-Gentil, Laure, Blancher, Philippe, Botreau, Samuel, Chardon, Cécile, Crepin, Laura, Cordier, Tristan, Cordonier, Arielle, Domaizon, Isabelle, Ferrari, Benoit J. D

Journal:

Environmental Science and Pollution Research

Year:

2018

Language:

english

File:

PDF, 1.81 MB

english, 2018

46

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

Pawlowski, Jan, Kelly-Quinn, Mary, Altermatt, Florian, Apothéloz-Perret-Gentil, Laure, Beja, Pedro, Boggero, Angela, Borja, Angel, Bouchez, Agnès, Cordier, Tristan, Domaizon, Isabelle, Feio, Maria Joa

Journal:

Science of The Total Environment

Year:

2018

File:

PDF, 1.13 MB

2018

47

Impact of Toxic Cyanobacterial Blooms on Eurasian Perch (Perca fluviatilis): Experimental Study and In Situ Observations in a Peri-Alpine Lake

Sotton, Benoît, Guillard, Jean, Bony, Sylvie, Devaux, Alain, Domaizon, Isabelle, Givaudan, Nicolas, Crespeau, François, Huet, Hélène, Anneville, Orlane, de Oliveira Azevedo, Sandra Maria Feliciano

Journal:

Year:

2012

Language:

english

File:

PDF, 890 KB

english, 2012

48

High-resolution paleolimnology opens new management perspectives for lakes adaptation to climate warming

Perga, Marie-Elodie, Frossard, Victor, Jenny, Jean-Philippe, Alric, Benjamin, Arnaud, Fabien, Berthon, Vincent, Black, Jessica L., Domaizon, Isabelle, Giguet-Covex, Charline, Kirkham, Amy, Magny, Mich

Journal:

Frontiers in Ecology and Evolution

Year:

2015

Language:

english

File:

PDF, 2.38 MB

english, 2015

49

Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France)

Lepère, Cécile, Domaizon, Isabelle, Hugoni, Mylène, Vellet, Agnès, Debroas, Didier

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 2.41 MB

english, 2016

50

Macrophytes moderate the taxonomic and functional composition of phytoplankton assemblages during a nutrient loading experiment

Barrow, Jennifer L., Beisner, Beatrix E., Giles, Rachel, Giani, Alessandra, Domaizon, Isabelle, Gregory‐Eaves, Irene

Journal:

Freshwater Biology

Year:

2019

Language:

english

File:

PDF, 1.39 MB

english, 2019